MolNFT v1 · #190523 · protein + DNA

Cryo-EM structure of unmodified nucleosome

7XD1: “Cryo-EM structure of unmodified nucleosome”. Electron microscopy. MolNFT v1 #190523 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7XD1
Type: protein + DNA
Length: 1,054 residues
Chains: 10
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A0A6I9KHI6, A0A0P9AXL3, P04908, O60814

Structure

electron microscopy · 8 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	98	—	A0A6I9KHI6
B	—	protein	80	—	A0A0P9AXL3
C, G	—	protein	109	—	P04908
E	—	protein	97	—	A0A6I9KHI6
F	—	protein	79	—	A0A0P9AXL3
I	—	dna	147	—	—
J	—	dna	147	—	—
D, H	—	protein	94	—	O60814

Compared structures

7XD1 · cryo-EM structure of unmodified nucleosome · the same entry in another collection · chain H against H, TM-score 1.00
P04908 · AlphaFold monomer V2.0 prediction for histone H2A type 1-B/E (P04908) · a predicted model of the same protein · chain C against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A6I9KHI6
Every structure of UniProt A0A0P9AXL3
Every structure of UniProt P04908
Every structure of UniProt O60814
Elsewhere: RCSB PDB 7XD1 · PDBe 7XD1 · UniProt A0A6I9KHI6 · UniProt A0A0P9AXL3 · UniProt P04908 · UniProt O60814

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