MolNFT v1 · #19029 · protein
Structure of the integrin ALPHA2BETA1 binding collagen peptide
1Q7D · Collagen alfa 1(I) chain peptide gpogpogfogergpogpogpo: “Structure of the integrin ALPHA2BETA1 binding collagen peptide”. X-ray diffraction, 2 ligands (ACE, NH2). MolNFT v1 #19029 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1Q7D
- Type
- protein
- Length
- 62 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Collagen alfa 1(I) chain peptide gpogpogfogergpogpogpo
- UniProt
- P02452
- Ligands
- ACE, NH2
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Collagen alfa 1(I) chain peptide gpogpogfogergpogpogpo | protein | 21 | 0% helix, 0% strand | P02452 |
| C | Collagen alfa 1(I) chain peptide gpogpogfogergpogpogpo | protein | 20 | 0% helix, 0% strand | P02452 |
Ligands and binding sites
- ACE · Acetyl group · ligand · 3 copies · chains A, B, C
- NH2 · Amino group · ion · 2 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- B–C · 713 Ų buried · 6 hydrogen bonds · protein-protein
- A–B · 690 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 614 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 17 modified, 3 covalent (hydroxylation, covalent ligand).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02452
- Elsewhere: RCSB PDB 1Q7D · PDBe 1Q7D · UniProt P02452
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.