MolNFT v1 · #189759 · protein

Complex structure of PD1 and 609A-Fab

7VUX: “Complex structure of PD1 and 609A-Fab”. X-ray diffraction, 2 ligands (MG, CL). MolNFT v1 #189759 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7VUX
Type: protein
Length: 552 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q15116
Ligands: MG, CL

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	123	—	Q15116
H	—	protein	216	—	—
L	—	protein	213	—	—

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A, H, L
CL · Chloride ion · ion · chains L
GOL · Glycerol · additive · 7 copies · chains A, H, L
EDO · 1,2-ethanediol · additive · 7 copies · chains A, H, L
PEG · Di(hydroxyethyl)ether · additive · chains L

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7VUX · Complex structure of PD1 and 609A-Fab · the same entry in another collection · chain H against H, TM-score 1.00
Q15116 · AlphaFold monomer V2.0 prediction for programmed cell death protein 1 (Q15116) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q15116
Elsewhere: RCSB PDB 7VUX · PDBe 7VUX · UniProt Q15116

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