MolNFT v1 · #189714 · protein
E. COLI ribonuclease hi in complex with one MG2+ (2)
7VSD: “E. COLI ribonuclease hi in complex with one MG2+ (2)”. X-ray diffraction, 2 ligands (MG, SO4), 1 pocket (best druggability 0.70). MolNFT v1 #189714 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VSD
- Type
- protein
- Length
- 310 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribonuclease hi
- EC
- 3.1.26.4
- UniProt
- P0A7Y4
- Ligands
- MG, SO4
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ribonuclease hi (EC 3.1.26.4) | protein | 155 | 34% helix, 32% strand | P0A7Y4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 561 | 0.70 | 0.79 | 62 | SO4 |
Interfaces
1 interface between chains.
- A–B · 774 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 7VSD · E. coli Ribonuclease HI in complex with one Mg2+ (2) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A7Y4
- Elsewhere: RCSB PDB 7VSD · PDBe 7VSD · UniProt P0A7Y4
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