MolNFT v1 · #189604 · protein
Crystal structure of limf prenyltransferase bound with a peptide substrate and gspp
7VMW: “Crystal structure of limf prenyltransferase bound with a peptide substrate and gspp”. X-ray diffraction, 5 ligands (ACE, GST, PPV). MolNFT v1 #189604 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VMW
- Type
- protein
- Length
- 595 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A372DCN7
- Ligands
- ACE, GST, PPV, MG, NH2
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 296 | — | A0A372DCN7 |
| B | — | protein | 294 | — | A0A372DCN7 |
| C | — | protein | 5 | — | — |
Ligands and binding sites
- ACE · Acetyl group · ligand · chains A, C
- GST · Geranyl S-thiolodiphosphate · ligand · chains A, C
- PPV · Pyrophosphate · ligand · chains B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- NH2 · Amino group · ion · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VMW · Crystal structure of LimF prenyltransferase bound with a peptide substrate and GSPP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A372DCN7
- Elsewhere: RCSB PDB 7VMW · PDBe 7VMW · UniProt A0A372DCN7
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