MolNFT v1 · #189562 · protein
The complex structure of beta-1,2-glucosyltransferase from ignavibacterium album with glucose
7VKX: “The complex structure of beta-1,2-glucosyltransferase from ignavibacterium album with glucose”. X-ray diffraction, 2 ligands (BGC, CA), 17 pockets (best druggability 0.83). MolNFT v1 #189562 on GenesisL1: 3D structure, binding sites…
- PDB
- 7VKX
- Type
- protein
- Length
- 1,407 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-1,2-glucosyltransferase
- UniProt
- I0AIT9
- Ligands
- BGC, CA
- Pockets
- 17 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-1,2-glucosyltransferase | protein | 702 | 36% helix, 24% strand | I0AIT9 |
| B | Beta-1,2-glucosyltransferase | protein | 705 | 35% helix, 24% strand | I0AIT9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
17 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 698 | 0.83 | 0.87 | 111 | BGC |
| 2 | 261 | 0.75 | 0.88 | 49 | BGC |
| 3 | 53 | 0.71 | 0.98 | 21 | empty |
| 4 | 399 | 0.68 | 0.80 | 57 | empty |
| 5 | 324 | 0.65 | 0.80 | 56 | empty |
Interfaces
1 interface between chains.
- A–B · 1819 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 7VKX · The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I0AIT9
- Elsewhere: RCSB PDB 7VKX · PDBe 7VKX · UniProt I0AIT9
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