MolNFT v1 · #189487 · protein

Cryo-EM structure of bacteriophage lambda procapsid at 5.03 ångström

7VI9 · Major capsid protein: “Cryo-EM structure of bacteriophage lambda procapsid at 5.03 ångström”. Electron microscopy, 20 pockets (best druggability 0.83). MolNFT v1 #189487 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7VI9
Type: protein
Length: 2,345 residues
Chains: 7
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Major capsid protein
UniProt: P03713
Pockets: 20 · best druggability 0.83

Structure

electron microscopy · 1 distinct chain · 22% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G	Major capsid protein	protein	335	22% helix, 23% strand	P03713

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	717	0.83	0.86	91	empty
2	1064	0.81	0.83	137	empty
3	1036	0.81	0.82	109	empty
4	376	0.80	0.89	64	empty
5	860	0.79	0.82	96	empty

Interfaces

11 interfaces between chains.

D–E · 2143 Å² buried · 28 hydrogen bonds · protein-protein
A–F · 2062 Å² buried · 23 hydrogen bonds · protein-protein
A–B · 2034 Å² buried · 26 hydrogen bonds · protein-protein
C–D · 2020 Å² buried · 25 hydrogen bonds · protein-protein
B–C · 1981 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

7VI9 · Cryo-EM structure of bacteriophage lambda procapsid at 5.03 Angstrom · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03713
Elsewhere: RCSB PDB 7VI9 · PDBe 7VI9 · UniProt P03713

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