Research workbench
Cryo-EM structure of bacteriophage lambda procapsid at 5.03 ångström
Analyse Cryo-EM structure of bacteriophage lambda procapsid at 5.03 ångström in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7VI9
- Type
- protein
- Length
- 2,345 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major capsid protein
- UniProt
- P03713
- Pockets
- 20 · best druggability 0.83
Structure
electron microscopy · 1 distinct chain · 22% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G | Major capsid protein | protein | 335 | 22% helix, 23% strand | P03713 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 717 | 0.83 | 0.86 | 91 | empty |
| 2 | 1064 | 0.81 | 0.83 | 137 | empty |
| 3 | 1036 | 0.81 | 0.82 | 109 | empty |
| 4 | 376 | 0.80 | 0.89 | 64 | empty |
| 5 | 860 | 0.79 | 0.82 | 96 | empty |
Interfaces
11 interfaces between chains.
- D–E · 2143 Ų buried · 28 hydrogen bonds · protein-protein
- A–F · 2062 Ų buried · 23 hydrogen bonds · protein-protein
- A–B · 2034 Ų buried · 26 hydrogen bonds · protein-protein
- C–D · 2020 Ų buried · 25 hydrogen bonds · protein-protein
- B–C · 1981 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 7VI9 · Cryo-EM structure of bacteriophage lambda procapsid at 5.03 Angstrom · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03713
- Elsewhere: RCSB PDB 7VI9 · PDBe 7VI9 · UniProt P03713
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.