MolNFT v1 · #189222 · protein

Crystal structure of lacto-N-biosidase tnx from tynzenella nexilis, lacto-N-biose complex

7V6M · Fibronectin type III domain-containing protein: “Crystal structure of lacto-N-biosidase tnx from tynzenella nexilis, lacto-N-biose complex”. X-ray diffraction, 2 ligands (NAG, GAL), 1 pocket (best druggability 0.57). MolNFT v1…

PDB: 7V6M
Type: protein
Length: 570 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fibronectin type III domain-containing protein
UniProt: A0A413JBB4
Ligands: NAG, GAL
Pockets: 1 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fibronectin type III domain-containing protein	protein	570	5% helix, 36% strand	A0A413JBB4

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
GAL · beta-D-galactopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	245	0.57	0.79	50	NAG, GAL

Compared structures

7V6M · Crystal structure of lacto-N-biosidase TnX from Tynzenella nexilis, lacto-N-biose complex · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A413JBB4
Elsewhere: RCSB PDB 7V6M · PDBe 7V6M · UniProt A0A413JBB4

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