MolNFT v1 · #189180 · protein
Crystal structure of phospholipase D from pseudomonas aeruginosa PAO1 using in situ proteolysis
7V55: “Crystal structure of phospholipase D from pseudomonas aeruginosa PAO1 using in situ proteolysis”. X-ray diffraction, 1 ligand (CA), 9 pockets (best druggability 0.63). MolNFT v1 #189180 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7V55
- Type
- protein
- Length
- 781 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phospholipase D
- UniProt
- Q9HYC2
- Ligands
- CA
- Pockets
- 9 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phospholipase D | protein | 781 | 35% helix, 18% strand | Q9HYC2 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 426 | 0.63 | 0.77 | 41 | empty |
| 2 | 394 | 0.59 | 0.76 | 47 | empty |
| 3 | 73 | 0.40 | 0.79 | 22 | empty |
| 4 | 125 | 0.40 | 0.75 | 28 | empty |
| 5 | 101 | 0.39 | 0.75 | 21 | empty |
Compared structures
- 7V55 · Crystal structure of phospholipase D from Pseudomonas aeruginosa PAO1 using in situ… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HYC2
- Elsewhere: RCSB PDB 7V55 · PDBe 7V55 · UniProt Q9HYC2
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