MolNFT v1 · #188683 · protein
Structure of the SK/DHQASE/DHSD dimer from candida albicans ARO1
7U5U · Pentafunctional arom polypeptide: “Structure of the SK/DHQASE/DHSD dimer from candida albicans ARO1”. Electron microscopy, 17 pockets (best druggability 0.74). MolNFT v1 #188683 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 7U5U
- Type
- protein
- Length
- 1,283 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pentafunctional arom polypeptide
- EC
- 4.2.3.4, 2.5.1.19, 2.7.1.71, 4.2.1.10, 1.1.1.25
- UniProt
- Q5AME2
- Pockets
- 17 · best druggability 0.74
Structure
electron microscopy · 2 distinct chains · 33% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pentafunctional arom polypeptide (EC 4.2.3.4, 2.5.1.19, 2.7.1.71, 4.2.1.10, 1.1.1.25) | protein | 638 | 33% helix, 18% strand | Q5AME2 |
| B | Pentafunctional arom polypeptide (EC 4.2.3.4, 2.5.1.19, 2.7.1.71, 4.2.1.10, 1.1.1.25) | protein | 645 | 34% helix, 18% strand | Q5AME2 |
Pockets
17 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 745 | 0.74 | 0.79 | 58 | empty |
| 2 | 710 | 0.72 | 0.78 | 68 | empty |
| 3 | 368 | 0.68 | 0.81 | 36 | empty |
| 4 | 399 | 0.64 | 0.78 | 47 | empty |
| 5 | 119 | 0.44 | 0.77 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 956 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 7U5U · Structure of the SK/DHQase/DHSD dimer from Candida albicans Aro1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q5AME2 · AlphaFold monomer V2.0 prediction for pentafunctional arom polypeptide (Q5AME2) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5AME2
- Elsewhere: RCSB PDB 7U5U · PDBe 7U5U · UniProt Q5AME2
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