MolNFT v1 · #188349 · protein
Crystal structure of CSF1R kinase domain in complex with dp-6233
7TNH · Macrophage colony-stimulating factor 1 RECEPTOR,FIBROBLAST…: “Crystal structure of CSF1R kinase domain in complex with dp-6233”. X-ray diffraction, 3 ligands (I9W, NA, CL), 2 pockets (best druggability 0.80). MolNFT v1 #188349 on…
- PDB
- 7TNH
- Type
- protein
- Length
- 280 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Macrophage colony-stimulating factor 1 RECEPTOR,FIBROBLAST growth factor receptor 1…
- EC
- 2.7.10.1
- UniProt
- P07333
- Ligands
- I9W, NA, CL
- Pockets
- 2 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Macrophage colony-stimulating factor 1 RECEPTOR,FIBROBLAST growth factor receptor 1 chimera (EC 2.7.10.1) | protein | 280 | 40% helix, 18% strand | P07333 |
Ligands and binding sites
- I9W · 2,2-dimethyl-N-[(6-methyl-5-{[2-(1-methyl-1H-pyrazol-4-yl)pyridin-4-yl]oxy}pyridin-2-yl)carbamoyl]propanamide · ligand · chains A
- NA · Sodium ion · metal · chains A
- CL · Chloride ion · ion · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 261 | 0.80 | 0.92 | 40 | I9W |
| 2 | 149 | 0.51 | 0.79 | 22 | empty |
Compared structures
- 7TNH · Crystal structure of CSF1R kinase domain in complex with DP-6233 · the same entry in another collection · chain A against A, TM-score 1.00
- P07333 · AlphaFold monomer V2.0 prediction for macrophage colony-stimulating factor 1 receptor… · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07333
- Elsewhere: RCSB PDB 7TNH · PDBe 7TNH · UniProt P07333
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