MolNFT v1 · #187812 · protein
Structure of xenon-derivatized methyl-coenzyme M reductase from methanothermobacter marburgensis
7SXM: “Structure of xenon-derivatized methyl-coenzyme M reductase from methanothermobacter marburgensis”. X-ray diffraction, 5 ligands (F43, COM, MG). MolNFT v1 #187812 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7SXM
- Type
- protein
- Length
- 2,466 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P11558, P11560, P11562
- Ligands
- F43, COM, MG, NA, XE
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 549 | — | P11558 |
| B, E | — | protein | 442 | — | P11560 |
| C, F | — | protein | 243 | — | P11562 |
| D | — | protein | 547 | — | P11558 |
Ligands and binding sites
- F43 · Factor 430 · ligand · 2 copies · chains A, D, E, F, B, C
- COM · 1-thioethanesulfonic acid · ligand · 2 copies · chains A, B, C, D, E, F
- MG · Magnesium ion · metal · 2 copies · chains A, D
- NA · Sodium ion · metal · chains A, D
- XE · Xenon · ion · 8 copies · chains A, B, D, E
- ACT · Acetate ion · additive · 4 copies · chains A, E, B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7SXM · Structure of Xenon-derivatized Methyl-Coenzyme M Reductase from Methanothermobacter… · the same entry in another collection · chain F against F, TM-score 1.00
- P11558 · AlphaFold monomer V2.0 prediction for methyl-coenzyme M reductase I subunit alpha (P11558) · a predicted model of the same protein · chain D against A, TM-score 1.00
- P11560 · AlphaFold monomer V2.0 prediction for methyl-coenzyme M reductase I subunit beta (P11560) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P11562 · AlphaFold monomer V2.0 prediction for methyl-coenzyme M reductase I subunit gamma (P11562) · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11558
- Every structure of UniProt P11560
- Every structure of UniProt P11562
- Elsewhere: RCSB PDB 7SXM · PDBe 7SXM · UniProt P11558 · UniProt P11560 · UniProt P11562
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