MolNFT v1 · #187577 · protein

Pertussis toxin S1 bound to NAD+

7SKY: “Pertussis toxin S1 bound to NAD+”. X-ray diffraction, 2 ligands (NAD, IOD). MolNFT v1 #187577 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7SKY
Type: protein
Length: 717 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P04977
Ligands: NAD, IOD

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, A, D	—	protein	180	—	P04977
C	—	protein	177	—	P04977

Ligands and binding sites

NAD · Nicotinamide-adenine-dinucleotide · ligand · 4 copies · chains B, A, C, D
IOD · Iodide ion · ion · 4 copies · chains B, A, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7SKY · Pertussis toxin S1 bound to NAD+ · the same entry in another collection · chain B against B, TM-score 1.00
P04977 · AlphaFold monomer V2.0 prediction for pertussis toxin subunit 1 (P04977) · a predicted model of the same protein · chain B against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04977
Elsewhere: RCSB PDB 7SKY · PDBe 7SKY · UniProt P04977

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