MolNFT v1 · #187337 · protein + DNA
Ternary complex of DNA polymerase beta with template fapy-dg and an incoming dctp analog
7S9P: “Ternary complex of DNA polymerase beta with template fapy-dg and an incoming dctp analog”. X-ray diffraction, 4 ligands (XC5, MN, NA). MolNFT v1 #187337 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7S9P
- Type
- protein + DNA
- Length
- 357 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P06746
- Ligands
- XC5, MN, NA, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| T | — | dna | 16 | — | — |
| P | — | dna | 10 | — | — |
| D | — | dna | 5 | — | — |
| A | — | protein | 326 | — | P06746 |
Ligands and binding sites
- XC5 · 2'-deoxy-5'-O-[(S)-hydroxy{[(s)-hydroxy(phosphonooxy) phosphoryl]methyl}phosphoryl]cytidine · ligand · chains T, P, A
- MN · Manganese (II) ion · metal · 3 copies · chains A, P
- NA · Sodium ion · metal · 2 copies · chains D, A, P
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7S9P · Ternary complex of DNA Polymerase Beta with Template Fapy-dG and an incoming dCTP analog · the same entry in another collection · chain T against T, TM-score 1.00
- P06746 · AlphaFold monomer V2.0 prediction for DNA polymerase beta (P06746) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06746
- Elsewhere: RCSB PDB 7S9P · PDBe 7S9P · UniProt P06746
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