MolNFT v1 · #187186 · protein
Cryoem structure of methylococcus capsulatus (bath) pmmo in a native lipid nanodisc at 2.34 ångström resolution
7S4K: “Cryoem structure of methylococcus capsulatus (bath) pmmo in a native lipid nanodisc at 2.34 ångström…”. Electron microscopy, 5 ligands (D10, PLC, P1O). MolNFT v1 #187186 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7S4K
- Type
- protein
- Length
- 2,577 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- G1UBD1, Q603F1, Q607G3
- Ligands
- D10, PLC, P1O, HXG, CU
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E, I | — | protein | 382 | — | G1UBD1 |
| C, G, K | — | protein | 236 | — | Q603F1 |
| B, F, J | — | protein | 241 | — | Q607G3 |
Ligands and binding sites
- D10 · Decane · ligand · 18 copies · chains B, F, J
- PLC · Diundecyl phosphatidyl choline · ligand · 18 copies · chains C, F, A, B, I, K, G, E, J
- P1O · 1,2-didecanoyl-sn-glycero-3-phosphocholine · ligand · 12 copies · chains C, B, F, K, G, J
- HXG · 1,2-dihexanoyl-sn-glycero-3-phosphocholine · ligand · 6 copies · chains C, B, G, F, K, J
- CU · Copper (II) ion · metal · 9 copies · chains A, C, G, K, E, I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7S4K · CryoEM structure of Methylococcus capsulatus (Bath) pMMO in a native lipid nanodisc at… · the same entry in another collection · chain J against J, TM-score 1.00
- Q607G3 · AlphaFold monomer V2.0 prediction for particulate methane monooxygenase beta subunit… · a predicted model of the same protein · chain B against A, TM-score 0.99
- G1UBD1 · AlphaFold monomer V2.0 prediction for particulate methane monooxygenase alpha subunit… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G1UBD1
- Every structure of UniProt Q603F1
- Every structure of UniProt Q607G3
- Elsewhere: RCSB PDB 7S4K · PDBe 7S4K · UniProt G1UBD1 · UniProt Q603F1 · UniProt Q607G3
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