MolNFT v1 · #187063 · protein

Cryoem structure of arabidopsis thaliana phytochrome B

7RZW: “Cryoem structure of arabidopsis thaliana phytochrome B”. Electron microscopy, 1 ligand (O6E). MolNFT v1 #187063 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7RZW
Type: protein
Length: 1,723 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P14713
Ligands: O6E

Structure

electron microscopy · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	859	—	P14713
B	—	protein	864	—	P14713

Ligands and binding sites

O6E · 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7RZW · CryoEM structure of Arabidopsis thaliana phytochrome B · the same entry in another collection · chain A against A, TM-score 1.00
P14713 · AlphaFold monomer V2.0 prediction for phytochrome B (P14713) · a predicted model of the same protein · chain B against A, TM-score 0.60

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P14713
Elsewhere: RCSB PDB 7RZW · PDBe 7RZW · UniProt P14713

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