MolNFT v1 · #186996 · protein
Cryoem structure of kdelr with legobody
7RXC: “Cryoem structure of kdelr with legobody”. Electron microscopy, 2 ligands (POV, GLC). MolNFT v1 #186996 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7RXC
- Type
- protein
- Length
- 1,178 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A4Z0THX4, P99134, P06654, Q5ZKX9
- Ligands
- POV, GLC
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 207 | — | — |
| L | — | protein | 204 | — | — |
| N | — | protein | 126 | — | — |
| B | — | protein | 439 | — | A0A4Z0THX4, P99134, P06654 |
| K | — | protein | 202 | — | Q5ZKX9 |
Ligands and binding sites
- POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate · ligand · 4 copies · chains K
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7RXC · CryoEM structure of KDELR with Legobody · the same entry in another collection · chain K against K, TM-score 1.00
- Q5ZKX9 · AlphaFold monomer V2.0 prediction for er lumen protein-retaining receptor 2 (Q5ZKX9) · a predicted model of the same protein · chain K against A, TM-score 0.93
- P06654 · AlphaFold monomer V2.0 prediction for immunoglobulin G-binding protein G (P06654) · a predicted model of the same protein · chain B against A, TM-score 0.18
- P99134 · AlphaFold monomer V2.0 prediction for immunoglobulin G-binding protein a (P99134) · a predicted model of the same protein · chain B against A, TM-score 0.18
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A4Z0THX4
- Every structure of UniProt P99134
- Every structure of UniProt P06654
- Every structure of UniProt Q5ZKX9
- Elsewhere: RCSB PDB 7RXC · PDBe 7RXC · UniProt A0A4Z0THX4 · UniProt P99134 · UniProt P06654 · UniProt Q5ZKX9
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