MolNFT v1 · #186782 · protein

Cryo-EM structure of murine dispatched 'T' conformation

7RPI: “Cryo-EM structure of murine dispatched 'T' conformation”. Electron microscopy, 4 ligands (Y01, AV0, NAG). MolNFT v1 #186782 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7RPI
Type: protein
Length: 926 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q3TDN0
Ligands: Y01, AV0, NAG, NA

Structure

electron microscopy · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	926	—	Q3TDN0

Ligands and binding sites

Y01 · Cholesterol hemisuccinate · ligand · 26 copies · chains A
AV0 · 2-decyl-2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}dodecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside · ligand · 2 copies · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A
NA · Sodium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7RPI · Cryo-EM structure of murine Dispatched 'T' conformation · the same entry in another collection · chain A against A, TM-score 1.00
Q3TDN0 · AlphaFold monomer V2.0 prediction for protein dispatched homolog 1 (Q3TDN0) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q3TDN0
Elsewhere: RCSB PDB 7RPI · PDBe 7RPI · UniProt Q3TDN0

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