MolNFT v1 · #186642 · protein
Structure of the SARS-cov receptor binding domain in complex with the human neutralizing antibody Fab fragment, C118
7RKS: “Structure of the SARS-cov receptor binding domain in complex with the human neutralizing antibody Fab…”. X-ray diffraction, 2 ligands (NAG, FUC). MolNFT v1 #186642 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7RKS
- Type
- protein
- Length
- 1,239 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P59594
- Ligands
- NAG, FUC
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 220 | — | — |
| I | — | protein | 222 | — | — |
| L, M | — | protein | 214 | — | — |
| R | — | protein | 182 | — | P59594 |
| S | — | protein | 187 | — | P59594 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains R, S
- FUC · alpha-L-fucopyranose · sugar · chains S
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7RKS · Structure of the SARS-CoV receptor binding domain in complex with the human neutralizing… · the same entry in another collection · chain I against I, TM-score 1.00
- 3SCI · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain R against E, TM-score 0.92
- 3SCI · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain R against E, TM-score 0.92
- 3SCJ · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain R against E, TM-score 0.92
- 3SCJ · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain R against E, TM-score 0.92
- 3SCK · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain R against E, TM-score 0.92
- 3SCK · Crystal structure of spike protein receptor-binding domain from a predicted SARS… · a predicted model of the same protein · chain R against E, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P59594
- Elsewhere: RCSB PDB 7RKS · PDBe 7RKS · UniProt P59594
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