MolNFT v1 · #186607 · protein
Mopd-1 mutant-L47W
7RJF · [L47W]MOPD-1: “Mopd-1 mutant-L47W”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #186607 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7RJF
- Type
- protein
- Length
- 94 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- [L47W]MOPD-1
- Ligands
- ZN
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | [L47W]MOPD-1 | protein | 47 | 32% helix, 49% strand | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
- MLI · Malonate ion · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 560 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 7RJF · MOPD-1 mutant-L47W · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7RJF · PDBe 7RJF
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