MolNFT v1 · #18659 · protein

Apo structure of human cyclin-dependent kinase 2

1PW2 · Cell division protein kinase 2: “Apo structure of human cyclin-dependent kinase 2”. X-ray diffraction, 5 pockets (best druggability 0.68). MolNFT v1 #18659 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1PW2
Type: protein
Length: 294 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cell division protein kinase 2
EC: 2.7.1.-
UniProt: P24941
Pockets: 5 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cell division protein kinase 2 (EC 2.7.1.-)	protein	294	34% helix, 16% strand	P24941

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	186	0.68	0.86	33	empty
2	77	0.38	0.77	15	empty
3	55	0.32	0.77	16	empty
4	52	0.29	0.75	12	empty
5	52	0.25	0.72	15	empty

Compared structures

1PW2 · Apo structure of human cyclin-dependent kinase 2 · the same entry in another collection · chain A against A, TM-score 1.00
P24941 · AlphaFold monomer V2.0 prediction for cyclin-dependent kinase 2 (P24941) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P24941
Elsewhere: RCSB PDB 1PW2 · PDBe 1PW2 · UniProt P24941

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