MolNFT v1 · #186318 · protein
LC3A in complex with fragment 2-10
7RA0 · Microtubule-associated proteins 1A/1B light chain 3A: “LC3A in complex with fragment 2-10”. X-ray diffraction, 1 ligand (2JI), 2 pockets (best druggability 0.35). MolNFT v1 #186318 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7RA0
- Type
- protein
- Length
- 115 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Microtubule-associated proteins 1A/1B light chain 3A
- UniProt
- Q9H492
- Ligands
- 2JI
- Pockets
- 2 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Microtubule-associated proteins 1A/1B light chain 3A | protein | 115 | 33% helix, 23% strand | Q9H492 |
Ligands and binding sites
- 2JI · (5-ethyl-2-methyl-1H-indol-3-yl)acetic acid · ligand · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.35 | 0.75 | 24 | empty |
| 2 | 61 | 0.29 | 0.75 | 17 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H492
- Elsewhere: RCSB PDB 7RA0 · PDBe 7RA0 · UniProt Q9H492
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