MolNFT v1 · #186274 · protein

Crystal structure of pseudooceanicola lipolyticus argonaute

7R8F: “Crystal structure of pseudooceanicola lipolyticus argonaute”. X-ray diffraction, 6 pockets (best druggability 0.75). MolNFT v1 #186274 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7R8F
Type: protein
Length: 766 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Argonaute
UniProt: A0A2M8J4C7
Pockets: 6 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Argonaute	protein	766	29% helix, 27% strand	A0A2M8J4C7

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	651	0.75	0.81	78	empty
2	614	0.74	0.81	53	empty
3	116	0.63	0.87	23	empty
4	118	0.46	0.79	25	empty
5	89	0.41	0.77	15	empty

Compared structures

7R8F · Crystal structure of Pseudooceanicola lipolyticus Argonaute · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2M8J4C7
Elsewhere: RCSB PDB 7R8F · PDBe 7R8F · UniProt A0A2M8J4C7

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