Research workbench
Crystal structure of pseudooceanicola lipolyticus argonaute
Analyse Crystal structure of pseudooceanicola lipolyticus argonaute in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7R8F
- Type
- protein
- Length
- 766 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Argonaute
- UniProt
- A0A2M8J4C7
- Pockets
- 6 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Argonaute | protein | 766 | 29% helix, 27% strand | A0A2M8J4C7 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 651 | 0.75 | 0.81 | 78 | empty |
| 2 | 614 | 0.74 | 0.81 | 53 | empty |
| 3 | 116 | 0.63 | 0.87 | 23 | empty |
| 4 | 118 | 0.46 | 0.79 | 25 | empty |
| 5 | 89 | 0.41 | 0.77 | 15 | empty |
Compared structures
- 7R8F · Crystal structure of Pseudooceanicola lipolyticus Argonaute · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2M8J4C7
- Elsewhere: RCSB PDB 7R8F · PDBe 7R8F · UniProt A0A2M8J4C7
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