MolNFT v1 · #186206 · protein
Monocot chimeric jacalin JAC1 from oryza sativa: dirigent domain (crystal form 1)
7R5Z · Dirigent protein: “Monocot chimeric jacalin JAC1 from oryza sativa: dirigent domain (crystal form 1)”. X-ray diffraction, 2 ligands (CA, CL), 2 pockets (best druggability 0.77). MolNFT v1 #186206 on GenesisL1: 3D structure, binding…
- PDB
- 7R5Z
- Type
- protein
- Length
- 435 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dirigent protein
- UniProt
- Q306J3
- Ligands
- CA, CL
- Pockets
- 2 · best druggability 0.77
Structure
x-ray diffraction · 3 distinct chains · 2% helix, 60% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dirigent protein | protein | 142 | 2% helix, 61% strand | Q306J3 |
| B | Dirigent protein | protein | 154 | 2% helix, 63% strand | Q306J3 |
| C | Dirigent protein | protein | 139 | 2% helix, 57% strand | Q306J3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 113 | 0.77 | 0.96 | 30 | CA |
| 2 | 54 | 0.29 | 0.75 | 16 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1471 Ų buried · 18 hydrogen bonds · protein-protein
- A–C · 989 Ų buried · 4 hydrogen bonds · protein-protein
- B–C · 937 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 7R5Z · Monocot chimeric jacalin JAC1 from Oryza sativa: dirigent domain (crystal form 1) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q306J3
- Elsewhere: RCSB PDB 7R5Z · PDBe 7R5Z · UniProt Q306J3
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