MolNFT v1 · #186162 · protein
S-adenosylmethionine synthetase from lactobacillus plantarum complexed with amppnp, methionine and SAM
7R3B: “S-adenosylmethionine synthetase from lactobacillus plantarum complexed with amppnp, methionine and SAM”. X-ray diffraction, 4 ligands (PPK, ANP, MG). MolNFT v1 #186162 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7R3B
- Type
- protein
- Length
- 2,940 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0G9F5E5
- Ligands
- PPK, ANP, MG, K
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 365 | — | A0A0G9F5E5 |
| B | — | protein | 362 | — | A0A0G9F5E5 |
| C | — | protein | 371 | — | A0A0G9F5E5 |
| D | — | protein | 369 | — | A0A0G9F5E5 |
| E | — | protein | 371 | — | A0A0G9F5E5 |
| F | — | protein | 369 | — | A0A0G9F5E5 |
| G | — | protein | 367 | — | A0A0G9F5E5 |
| H | — | protein | 366 | — | A0A0G9F5E5 |
Ligands and binding sites
- PPK · (diphosphono)aminophosphonic acid · ligand · 4 copies · chains A, B, G, H
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · 4 copies · chains C, D, E, F
- MG · Magnesium ion · metal · 16 copies · chains A, B, C, D, E, F, G, H
- K · Potassium ion · metal · 5 copies · chains A, B, C, D, E, F, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7R3B · S-adenosylmethionine synthetase from Lactobacillus plantarum complexed with AMPPNP… · the same entry in another collection · chain F against F, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0G9F5E5
- Elsewhere: RCSB PDB 7R3B · PDBe 7R3B · UniProt A0A0G9F5E5
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