MolNFT v1 · #186116 · protein

Neurofibromin in open conformation

7R04 · Isoform I of neurofibromin: “Neurofibromin in open conformation”. Electron microscopy, 1 ligand (GSP), 20 pockets (best druggability 0.86). MolNFT v1 #186116 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7R04
Type: protein
Length: 4,555 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Isoform I of neurofibromin
UniProt: P21359
Ligands: GSP
Pockets: 20 · best druggability 0.86

Structure

electron microscopy · 2 distinct chains · 65% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Isoform I of neurofibromin	protein	2326	66% helix, 3% strand	P21359
B	Isoform I of neurofibromin	protein	2229	65% helix, 4% strand	P21359

Ligands and binding sites

GSP · 5'-guanosine-diphosphate-monothiophosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	445	0.86	0.93	36	empty
2	527	0.86	0.91	42	empty
3	627	0.79	0.85	55	empty
4	641	0.78	0.83	80	empty
5	517	0.77	0.85	62	empty

Interfaces

1 interface between chains.

A–B · 4306 Å² buried · 28 hydrogen bonds · protein-protein

Compared structures

7R04 · Neurofibromin in open conformation · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P21359
Elsewhere: RCSB PDB 7R04 · PDBe 7R04 · UniProt P21359

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