MolNFT v1 · #186048 · protein
SARS-cov-2 S omicron spike B.1.1.529 - 3-P2G3 and 1-P5C3 fabs (global)
7QTI: “SARS-cov-2 S omicron spike B.1.1.529 - 3-P2G3 and 1-P5C3 fabs (global)”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #186048 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7QTI
- Type
- protein
- Length
- 5,061 residues
- Chains
- 11
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2, M1E1E4
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| G, B, I | — | protein | 228 | — | — |
| H, C, J | — | protein | 214 | — | — |
| E | — | protein | 215 | — | — |
| F | — | protein | 221 | — | — |
| D | — | protein | 1103 | — | P0DTC2, M1E1E4 |
| K | — | protein | 1096 | — | P0DTC2, M1E1E4 |
| A | — | protein | 1100 | — | P0DTC2, M1E1E4 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 60 copies · chains D, A, K
- BMA · beta-D-mannopyranose · sugar · 3 copies
- MAN · alpha-D-mannopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7QTI · SARS-CoV-2 S Omicron Spike B.1.1.529 - 3-P2G3 and 1-P5C3 Fabs (Global) · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Every structure of UniProt M1E1E4
- Elsewhere: RCSB PDB 7QTI · PDBe 7QTI · UniProt P0DTC2 · UniProt M1E1E4
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