MolNFT v1 · #186041 · protein

Crystal structure of homing endonuclease-associated phovma intein (C1A)

7QST · V-type ATP synthase subunit a: “Crystal structure of homing endonuclease-associated phovma intein (C1A)”. X-ray diffraction, 2 ligands (NI, CD), 3 pockets (best druggability 0.50). MolNFT v1 #186041 on GenesisL1: 3D structure…

PDB: 7QST
Type: protein
Length: 361 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: V-type ATP synthase subunit a
UniProt: A0A832T7H1
Ligands: NI, CD
Pockets: 3 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	V-type ATP synthase subunit a	protein	361	24% helix, 42% strand	A0A832T7H1

Ligands and binding sites

NI · Nickel (II) ion · metal · 3 copies · chains A
CD · Cadmium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	170	0.50	0.77	37	empty
2	66	0.34	0.76	16	empty
3	65	0.31	0.75	16	empty

Compared structures

7QST · Crystal structure of homing endonuclease-associated PhoVMA intein (C1A) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A832T7H1
Elsewhere: RCSB PDB 7QST · PDBe 7QST · UniProt A0A832T7H1

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