MolNFT v1 · #186040 · protein
Crystal structure of homing endonuclease-associated tlivma intein (C1A)
7QSS · V-type ATP synthase alpha chain: “Crystal structure of homing endonuclease-associated tlivma intein (C1A)”. X-ray diffraction, 4 pockets (best druggability 0.50). MolNFT v1 #186040 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7QSS
- Type
- protein
- Length
- 432 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- V-type ATP synthase alpha chain
- EC
- 7.1.2.2
- UniProt
- H3ZKG9
- Pockets
- 4 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | V-type ATP synthase alpha chain (EC 7.1.2.2) | protein | 432 | 28% helix, 37% strand | H3ZKG9 |
Ligands and binding sites
- FMT · Formic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 183 | 0.50 | 0.77 | 25 | empty |
| 2 | 96 | 0.44 | 0.79 | 18 | empty |
| 3 | 99 | 0.37 | 0.75 | 16 | empty |
| 4 | 81 | 0.32 | 0.74 | 16 | empty |
Compared structures
- 7QSS · Crystal structure of homing endonuclease-associated TliVMA intein (C1A) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H3ZKG9
- Elsewhere: RCSB PDB 7QSS · PDBe 7QSS · UniProt H3ZKG9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.