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Crystal structure of homing endonuclease-associated tlivma intein (C1A)

Analyse Crystal structure of homing endonuclease-associated tlivma intein (C1A) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7QSS
Type: protein
Length: 432 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: V-type ATP synthase alpha chain
EC: 7.1.2.2
UniProt: H3ZKG9
Pockets: 4 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	V-type ATP synthase alpha chain (EC 7.1.2.2)	protein	432	28% helix, 37% strand	H3ZKG9

Ligands and binding sites

FMT · Formic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	183	0.50	0.77	25	empty
2	96	0.44	0.79	18	empty
3	99	0.37	0.75	16	empty
4	81	0.32	0.74	16	empty

Compared structures

7QSS · Crystal structure of homing endonuclease-associated TliVMA intein (C1A) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt H3ZKG9
Elsewhere: RCSB PDB 7QSS · PDBe 7QSS · UniProt H3ZKG9

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