X-ray structure of the adduct obtained upon reaction of [cis- RH2(OCOCH3)2(OCOCF3)2] with RNase a (3)

Structure

x-ray diffraction · 2 distinct chains · 21% helix, 36% strand (DSSP).

Ligands and binding sites

• F5I · cis-bis(mi2-acetato-O, O')-tetraaquo-dirhodium(II) · ligand · 2 copies · chains B
• F5T · cis-bis(mi2-acetato-O, O')-(mi2-trifluoroacetato-O, O')-diaquo-dirhodium (II) · ligand · chains A
• F3I · (mi2-acetato-O, O')-hexaaquo-dirhodium (II) · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Interfaces

1 interface between chains.

• A–B · 330 Ų buried · 4 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

• 7QPY · X-ray structure of the adduct obtained upon reaction of [cis-Rh2(OCOCH3)2(OCOCF3)2] with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P61823
• Elsewhere: RCSB PDB 7QPY · PDBe 7QPY · UniProt P61823