MolNFT v1 · #185793 · protein
Human connexin 26 at 55MM hg PCO2, PH7.4:TWO masked subunits, class D
7QEV · Gap junction beta-2 protein: “Human connexin 26 at 55MM hg PCO2, PH7.4:TWO masked subunits, class D”. Electron microscopy, 1 ligand (PTY), 6 pockets (best druggability 0.82). MolNFT v1 #185793 on GenesisL1: 3D structure, binding…
- PDB
- 7QEV
- Type
- protein
- Length
- 383 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gap junction beta-2 protein
- UniProt
- P29033
- Ligands
- PTY
- Pockets
- 6 · best druggability 0.82
Structure
electron microscopy · 2 distinct chains · 69% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gap junction beta-2 protein | protein | 193 | 68% helix, 5% strand | P29033 |
| B | Gap junction beta-2 protein | protein | 190 | 69% helix, 5% strand | P29033 |
Ligands and binding sites
- PTY · Phosphatidylethanolamine · ligand · 2 copies · chains A, B
- LMT · Dodecyl-beta-D-maltoside · additive · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 991 | 0.82 | 0.83 | 87 | empty |
| 2 | 267 | 0.72 | 0.86 | 33 | empty |
| 3 | 76 | 0.46 | 0.82 | 18 | empty |
| 4 | 81 | 0.43 | 0.79 | 17 | empty |
| 5 | 127 | 0.41 | 0.74 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1514 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 7QEV · human Connexin 26 at 55mm Hg PCO2, pH7.4:two masked subunits, class D · the same entry in another collection · chain A against A, TM-score 1.00
- P29033 · AlphaFold monomer V2.0 prediction for gap junction beta-2 protein (P29033) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29033
- Elsewhere: RCSB PDB 7QEV · PDBe 7QEV · UniProt P29033
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