MolNFT v1 · #185765 · protein

Structure of the orange carotenoid protein from planktothrix agardhii binding echinenone in the C2 space group

7QD0 · Orange carotenoid-binding protein: “Structure of the orange carotenoid protein from planktothrix agardhii binding echinenone in the C2 space group”. X-ray diffraction, 2 ligands (ARG, ECH), 2 pockets (best druggability 0.88). MolNFT…

PDB: 7QD0
Type: protein
Length: 307 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Orange carotenoid-binding protein
UniProt: A0A1J1JHR9
Ligands: ARG, ECH
Pockets: 2 · best druggability 0.88

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Orange carotenoid-binding protein	protein	307	48% helix, 17% strand	A0A1J1JHR9

Ligands and binding sites

ARG · Arginine · ligand · chains A
ECH · beta,beta-caroten-4-one · ligand · chains A
GOL · Glycerol · additive · 5 copies · chains A
ACT · Acetate ion · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	504	0.88	0.94	49	GOL, ECH
2	110	0.35	0.73	27	empty

Compared structures

7QD0 · Structure of the orange carotenoid protein from Planktothrix agardhii binding echine in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1J1JHR9
Elsewhere: RCSB PDB 7QD0 · PDBe 7QD0 · UniProt A0A1J1JHR9

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