MolNFT v1 · #185741 · protein
B12-dependent radical SAM methyltransferase, MMP10 with [4FE-4S] cluster, cobalamin, and S-methyl-5'-thioadenosine bound.
7QBT: “B12-dependent radical SAM methyltransferase, MMP10 with [4FE-4S] cluster, cobalamin, and…”. X-ray diffraction, 5 ligands (SF4, MTA, COB). MolNFT v1 #185741 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7QBT
- Type
- protein
- Length
- 1,633 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A832SFM5
- Ligands
- SF4, MTA, COB, FE, NA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 411 | — | A0A832SFM5 |
| B | — | protein | 408 | — | A0A832SFM5 |
| C | — | protein | 404 | — | A0A832SFM5 |
| D | — | protein | 410 | — | A0A832SFM5 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 4 copies · chains A, B, C, D
- MTA · 5'-deoxy-5'-methylthioadenosine · ligand · 4 copies · chains A, B, C, D
- COB · Co-methylcobalamin · ligand · 4 copies · chains A, B, C, D
- FE · Fe (III) ion · metal · 4 copies · chains A, B, C, D
- NA · Sodium ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7QBT · B12-dependent radical SAM methyltransferase, Mmp10 with [4Fe-4S] cluster, cobalamin, and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A832SFM5
- Elsewhere: RCSB PDB 7QBT · PDBe 7QBT · UniProt A0A832SFM5
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