MolNFT v1 · #185632 · protein
Crystal structure of DMC1GALT1 in complex with udp-MN2+ and the apd- tgalnac-rp
7Q4I: “Crystal structure of DMC1GALT1 in complex with udp-MN2+ and the apd- tgalnac-rp”. X-ray diffraction, 3 ligands (UDP, A2G, MN). MolNFT v1 #185632 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7Q4I
- Type
- protein
- Length
- 570 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q7K237, P15941
- Ligands
- UDP, A2G, MN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 279 | — | Q7K237 |
| B | — | protein | 281 | — | Q7K237 |
| G, F | — | protein | 5 | — | P15941 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · 2 copies · chains A, F, B, G
- A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · 2 copies · chains B, G, A, F
- MN · Manganese (II) ion · metal · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7Q4I · Crystal structure of DmC1GalT1 in complex with UDP-Mn2+ and the APD-TGalNAc-RP · the same entry in another collection · chain A against A, TM-score 1.00
- Q7K237 · AlphaFold monomer V2.0 prediction for glycoprotein-N- acetylgalactosamine… · a predicted model of the same protein · chain A against A, TM-score 0.99
- P15941 · AlphaFold monomer V2.0 prediction for mucin-1 (P15941) · a predicted model of the same protein · chain G against A, TM-score 0.79
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7K237
- Every structure of UniProt P15941
- Elsewhere: RCSB PDB 7Q4I · PDBe 7Q4I · UniProt Q7K237 · UniProt P15941
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