MolNFT v1 · #185603 · protein + DNA
Cryo-EM structure of clamped S.CEREVISIAE condensin-DNA complex (form II)
7Q2Y: “Cryo-EM structure of clamped S.CEREVISIAE condensin-DNA complex (form II)”. Electron microscopy, 3 ligands (ADP, BEF, MG). MolNFT v1 #185603 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7Q2Y
- Type
- protein + DNA
- Length
- 2,132 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P38989, Q12267, P38170, Q06156
- Ligands
- ADP, BEF, MG
Structure
electron microscopy · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 431 | — | P38989 |
| B | — | protein | 388 | — | Q12267 |
| C | — | protein | 281 | — | P38170 |
| D | — | protein | 976 | — | Q06156 |
| F | — | dna | 28 | — | — |
| G | — | dna | 28 | — | — |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B
- BEF · Beryllium trifluoride ion · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7Q2Y · Cryo-EM structure of clamped S.cerevisiae condensin-DNA complex (form II) · the same entry in another collection · chain G against G, TM-score 1.00
- Q06156 · AlphaFold monomer V2.0 prediction for condensin complex subunit 1 (Q06156) · a predicted model of the same protein · chain D against A, TM-score 0.94
- Q12267 · AlphaFold monomer V2.0 prediction for structural maintenance of chromosomes protein 4… · a predicted model of the same protein · chain B against A, TM-score 0.92
- P38989 · AlphaFold monomer V2.0 prediction for structural maintenance of chromosomes protein 2… · a predicted model of the same protein · chain A against A, TM-score 0.74
- P38170 · AlphaFold monomer V2.0 prediction for condensin complex subunit 2 (P38170) · a predicted model of the same protein · chain C against A, TM-score 0.37
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38989
- Every structure of UniProt Q12267
- Every structure of UniProt P38170
- Every structure of UniProt Q06156
- Elsewhere: RCSB PDB 7Q2Y · PDBe 7Q2Y · UniProt P38989 · UniProt Q12267 · UniProt P38170 · UniProt Q06156
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