MolNFT v1 · #185554 · protein

Crystal structure of the peptide transporter yepept-K314A at 2.93 a

7Q0L: “Crystal structure of the peptide transporter yepept-K314A at 2.93 a”. X-ray diffraction, 5 pockets (best druggability 0.78). MolNFT v1 #185554 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7Q0L
Type: protein
Length: 482 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peptide transporter yepept
UniProt: A0A2R9TD79
Pockets: 5 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 78% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peptide transporter yepept	protein	482	78% helix, 1% strand	A0A2R9TD79

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	828	0.78	0.81	68	empty
2	609	0.66	0.75	41	empty
3	198	0.53	0.77	27	empty
4	95	0.39	0.76	18	empty
5	59	0.29	0.73	11	empty

Compared structures

7Q0L · Crystal structure of the peptide transporter YePEPT-K314A at 2.93 A · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2R9TD79
Elsewhere: RCSB PDB 7Q0L · PDBe 7Q0L · UniProt A0A2R9TD79

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