MolNFT v1 · #185380 · protein
S. cerevisiae ATM1 in MSP1E3D1 nanodiscs with bound AMP-pnp and MG2+
7PSN: “S. cerevisiae ATM1 in MSP1E3D1 nanodiscs with bound AMP-pnp and MG2+”. Electron microscopy, 3 ligands (LOP, ANP, MG). MolNFT v1 #185380 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7PSN
- Type
- protein
- Length
- 1,170 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P40416
- Ligands
- LOP, ANP, MG
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 585 | — | P40416 |
Ligands and binding sites
- LOP · (1R)-2-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(dodecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate · ligand · 4 copies · chains A, B
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7PSN · S. cerevisiae Atm1 in MSP1E3D1 nanodiscs with bound AMP-PNP and Mg2+ · the same entry in another collection · chain A against A, TM-score 1.00
- P40416 · AlphaFold monomer V2.0 prediction for iron-sulfur clusters transporter ATM1… · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40416
- Elsewhere: RCSB PDB 7PSN · PDBe 7PSN · UniProt P40416
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