MolNFT v1 · #185270 · DNA

Parallel Q-D hybrid with 3' duplex stem-loop as a lateral snapback loop

7PNE · Ttamycdup-3SBL: “Parallel Q-D hybrid with 3' duplex stem-loop as a lateral snapback loop”. Solution nmr, 1 pocket (best druggability 0.30). MolNFT v1 #185270 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7PNE
Type: DNA
Length: 36 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ttamycdup-3SBL
Pockets: 1 · best druggability 0.30

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ttamycdup-3SBL	dna	36	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	72	0.30	0.74	17	empty

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

7PNE · Parallel Q-D hybrid with 3' duplex stem-loop as a lateral snapback loop · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7PNE · PDBe 7PNE

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