Research workbench
Parallel Q-D hybrid with 3' duplex stem-loop as a lateral snapback loop
Analyse Parallel Q-D hybrid with 3' duplex stem-loop as a lateral snapback loop in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7PNE
- Type
- DNA
- Length
- 36 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ttamycdup-3SBL
- Pockets
- 1 · best druggability 0.30
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ttamycdup-3SBL | dna | 36 | — | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 72 | 0.30 | 0.74 | 17 | empty |
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 7PNE · Parallel Q-D hybrid with 3' duplex stem-loop as a lateral snapback loop · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7PNE · PDBe 7PNE
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