MolNFT v1 · #185153 · protein

Hhip-C in complex with heparin

7PGM: “Hhip-C in complex with heparin”. X-ray diffraction, 2 ligands (SGN, IDS). MolNFT v1 #185153 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7PGM
Type: protein
Length: 1,303 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q96QV1
Ligands: SGN, IDS

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	447	—	Q96QV1
B	—	protein	427	—	Q96QV1
C	—	protein	429	—	Q96QV1

Ligands and binding sites

SGN · 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose · sugar · 4 copies · chains B
IDS · 2-O-sulfo-alpha-L-idopyranuronic acid · sugar · 4 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7PGM · HHIP-C in complex with heparin · the same entry in another collection · chain A against A, TM-score 1.00
Q96QV1 · AlphaFold monomer V2.0 prediction for hedgehog-interacting protein (Q96QV1) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96QV1
Elsewhere: RCSB PDB 7PGM · PDBe 7PGM · UniProt Q96QV1

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