MolNFT v1 · #185145 · protein

Copper transporter pcob

7PGE · Copper resistance protein B: “Copper transporter pcob”. X-ray diffraction, 1 ligand (SCN), 1 pocket (best druggability 0.75). MolNFT v1 #185145 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7PGE
Type: protein
Length: 198 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Copper resistance protein B
UniProt: Q47453
Ligands: SCN
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 74% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Copper resistance protein B	protein	198	5% helix, 74% strand	Q47453

Ligands and binding sites

SCN · Thiocyanate ion · ion · chains B
C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · chains B
LDA · Lauryl dimethylamine-N-oxide · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	638	0.75	0.82	57	empty

Compared structures

7PGE · copper transporter PcoB · the same entry in another collection · chain B against B, TM-score 1.00
Q47453 · AlphaFold monomer V2.0 prediction for copper resistance protein B (Q47453) · a predicted model of the same protein · chain B against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q47453
Elsewhere: RCSB PDB 7PGE · PDBe 7PGE · UniProt Q47453

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