MolNFT v1 · #184969 · protein + DNA
Prim-pol domain of CRISPR-associated prim-pol (capp) from marinitoga sp. 1137 - primer initiation complex
7P9J: “Prim-pol domain of CRISPR-associated prim-pol (capp) from marinitoga sp. 1137 - primer initiation complex”. X-ray diffraction, 3 ligands (DZ4, GTP, CO). MolNFT v1 #184969 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7P9J
- Type
- protein + DNA
- Length
- 657 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- H2J4R1
- Ligands
- DZ4, GTP, CO
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 218 | — | H2J4R1 |
| B | — | protein | 218 | — | H2J4R1 |
| C | — | protein | 215 | — | H2J4R1 |
| D | — | dna | 6 | — | — |
Ligands and binding sites
- DZ4 · 2'-deoxy-5'-O-[(R)-hydroxy{[(r)-hydroxy(phosphonooxy) phosphoryl]amino}phosphoryl]adenosine · ligand · 4 copies · chains A, B, D, C
- GTP · Guanosine-5'-triphosphate · ligand · chains B, D
- CO · Cobalt (II) ion · metal · 7 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7P9J · Prim-Pol Domain of CRISPR-associated Prim-Pol (CAPP) from Marinitoga sp. 1137 - Primer… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H2J4R1
- Elsewhere: RCSB PDB 7P9J · PDBe 7P9J · UniProt H2J4R1
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