MolNFT v1 · #184946 · protein
Crystal structure of L147A/I351A variant of S-adenosylmethionine synthetase from methanocaldococcus jannaschii in complex with dmnb- SAM (4,5-dimethoxy-2-nitro benzyme S-adenosyl-methionine)
7P8M: “Crystal structure of L147A/I351A variant of S-adenosylmethionine synthetase from methanocaldococcus…”. X-ray diffraction, 3 ligands (3PO, 6IH, MG). MolNFT v1 #184946 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7P8M
- Type
- protein
- Length
- 812 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q58605
- Ligands
- 3PO, 6IH, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 404 | — | Q58605 |
| C | — | protein | 408 | — | Q58605 |
Ligands and binding sites
- 3PO · Triphosphate · ligand · 2 copies · chains A, C
- 6IH · 4,5-dimethoxy-2-nitro benzyme S-adenosyl-methionine · ligand · chains A, C
- MG · Magnesium ion · metal · 3 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7P8M · Crystal structure of L147A/I351A variant of S-adenosylmethionine synthetase from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q58605 · AlphaFold monomer V2.0 prediction for S-adenosylmethionine synthase (Q58605) · a predicted model of the same protein · chain C against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58605
- Elsewhere: RCSB PDB 7P8M · PDBe 7P8M · UniProt Q58605
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