MolNFT v1 · #184945 · protein + DNA
Crystal structure of pyrococcus abyssi 8-oxoguanine DNA glycosylase (pabagog) in complex with dsdna containing cytosine opposite to 8- oxog
7P8L: “Crystal structure of pyrococcus abyssi 8-oxoguanine DNA glycosylase (pabagog) in complex with dsdna…”. X-ray diffraction. MolNFT v1 #184945 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7P8L
- Type
- protein + DNA
- Length
- 260 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UZY0
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 242 | — | Q9UZY0 |
| B | — | dna | 9 | — | — |
| I | — | dna | 9 | — | — |
Ligands and binding sites
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7P8L · Crystal structure of Pyrococcus abyssi 8-oxoguanine DNA glycosylase (PabAGOG) in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UZY0 · AlphaFold monomer V2.0 prediction for N-GLYCOSYLASE/DNA lyase (Q9UZY0) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UZY0
- Elsewhere: RCSB PDB 7P8L · PDBe 7P8L · UniProt Q9UZY0
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