MolNFT v1 · #184920 · protein

Rabbit muscle glycogen phosphorylase T state

7P7D · Glycogen phosphorylase, muscle form: “Rabbit muscle glycogen phosphorylase T state”. X-ray diffraction, 16 pockets (best druggability 0.82). MolNFT v1 #184920 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7P7D
Type: protein
Length: 815 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycogen phosphorylase, muscle form
EC: 2.4.1.1
UniProt: P00489
Pockets: 16 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycogen phosphorylase, muscle form (EC 2.4.1.1)	protein	815	54% helix, 16% strand	P00489

Ligands and binding sites

DMS · Dimethyl sulfoxide · additive · 21 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

16 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	194	0.82	0.96	38	empty
2	74	0.72	0.96	26	empty
3	353	0.71	0.83	39	empty
4	125	0.55	0.82	19	empty
5	214	0.55	0.78	32	DMS

Modifications

Observed in the structure: 2 modified (cofactor, oxidation).

Compared structures

7P7D · Rabbit muscle Glycogen Phosphorylase T state · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00489
Elsewhere: RCSB PDB 7P7D · PDBe 7P7D · UniProt P00489

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