MolNFT v1 · #184808 · protein

Human RNA ligase rtcb in complex with gmp and CO(II)

7P3B: “Human RNA ligase rtcb in complex with gmp and CO(II)”. X-ray diffraction, 2 ligands (5GP, CO). MolNFT v1 #184808 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7P3B
Type: protein
Length: 987 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9Y3I0
Ligands: 5GP, CO

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	490	—	Q9Y3I0
B	—	protein	497	—	Q9Y3I0

Ligands and binding sites

5GP · Guanosine-5'-monophosphate · ligand · 2 copies · chains A, B
CO · Cobalt (II) ion · metal · 4 copies · chains A, B
FMT · Formic acid · additive · 4 copies · chains B
ACT · Acetate ion · additive · 2 copies · chains B
GOL · Glycerol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7P3B · Human RNA ligase RTCB in complex with GMP and Co(II) · the same entry in another collection · chain A against A, TM-score 1.00
Q9Y3I0 · AlphaFold monomer V2.0 prediction for RNA-splicing ligase rtcb homolog (Q9Y3I0) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Y3I0
Elsewhere: RCSB PDB 7P3B · PDBe 7P3B · UniProt Q9Y3I0

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