GL1X · GenesisL1 explorer

MolNFT v1 · #184658 · protein

Crystal structure of depupylase dop in complex with pup and AMP-pcp

7OXY: “Crystal structure of depupylase dop in complex with pup and AMP-pcp”. X-ray diffraction, 2 ligands (ACP, MG). MolNFT v1 #184658 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7OXY
Type
protein
Length
501 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
A0LU48, A0LU49
Ligands
ACP, MG

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein473—A0LU48
B—protein28—A0LU49

Ligands and binding sites

  • ACP · Phosphomethylphosphonic acid adenylate ester · ligand · chains A, B
  • MG · Magnesium ion · metal · 4 copies · chains A, B
  • EDO · 1,2-ethanediol · additive · 5 copies · chains A, B
  • ACT · Acetate ion · additive · 4 copies · chains A
  • PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A
  • PGE · Triethylene glycol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7OXY · Crystal structure of depupylase Dop in complex with Pup and AMP-PCP · the same entry in another collection · chain A against A, TM-score 1.00
  • A0LU48 · AlphaFold monomer V2.0 prediction for depupylase (A0LU48) · a predicted model of the same protein · chain A against A, TM-score 0.98
  • A0LU49 · AlphaFold monomer V2.0 prediction for prokaryotic ubiquitin-like protein pup (A0LU49) · a predicted model of the same protein · chain B against A, TM-score 0.36

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.